Sharmila S. Mande : rechercher sur Z-Library

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1

FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets

Dutta, Anirban, Haque, Mohammed Monzoorul, Bose, Tungadri, Reddy, C. V. S. K., Mande, Sharmila S.

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 384 KB

english, 2015

2

Xenobiotic Metabolism and Gut Microbiomes

Das, Anubhav, Srinivasan, Meenakshi, Ghosh, Tarini Shankar, Mande, Sharmila S., Wilson, Brenda A

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.63 MB

english, 2016

3

Protein–protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase

Sharmila S Mande, Steve Sarfaty, Mark D Allen, Richard N Perham, Wim GJ Hol

Journal:

Année:

1996

Langue:

english

Fichier:

PDF, 1.37 MB

english, 1996

4

Community-Analyzer: A platform for visualizing and comparing microbial community structure across microbiomes

Kuntal, Bhusan K., Ghosh, Tarini Shankar, Mande, Sharmila S

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 2.36 MB

english, 2013

5

Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups

Yadav, Deepak, Ghosh, Tarini Shankar, Mande, Sharmila S.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.97 MB

english, 2016

6

Gut Microbiomes of Indian Children of Varying Nutritional Status

Ghosh, Tarini Shankar, Sen Gupta, Sourav, Bhattacharya, Tanudeep, Yadav, Deepak, Barik, Anamitra, Chowdhury, Abhijit, Das, Bhabatosh, Mande, Sharmila S., Nair, G. Balakrish, Zwick, Michael Edward

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.84 MB

english, 2014

7

NetSets.js: A JavaScript framework for compositional assessment and comparison of biological networks through Venn integrated Network diagrams

Nagpal, Sunil, Kuntal, Bhusan K, Mande, Sharmila S, Valencia, Alfonso

Journal:

Année:

2020

Fichier:

PDF, 228 KB

2020

8

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences

Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram, Sharmila S Mande

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 355 KB

english, 2011

9

i-rDNA: alignment-free algorithm for rapidin silicodetection of ribosomal gene fragments from metagenomic sequence data sets

Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Sudha Chadaram, Sharmila S Mande

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 396 KB

english, 2011

10

INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences

Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Rachamalla Maheedhar Reddy, Chennareddy Venkata Siva Kumar Reddy, Nitin Kumar Singh, Sharmila S Mande

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 629 KB

english, 2011

11

Modelling of the regulation of thehilApromoter of type three secretion system ofSalmonella entericaserovar Typhimurium

Rengaswamy Maithreye, Sharmila S. Mande

Journal:

Systems and Synthetic Biology

Année:

2007

Langue:

english

Fichier:

PDF, 304 KB

english, 2007

12

INDeGenIUS, a new method for high-throughput identification of specialized functional islands in completely sequenced organisms

Sakshi Shrivastava, Ch. V. Siva Kumar Reddy, Sharmila S. Mande

Journal:

Journal of Biosciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.27 MB

english, 2010

13

Eu-Detect: An algorithm for detecting eukaryotic sequences in metagenomic data sets

Monzoorul Haque Mohammed, Sudha Chadaram, Dinakar Komanduri, Tarini Shankar Ghosh, Sharmila S Mande

Journal:

Journal of Biosciences

Année:

2011

Langue:

english

Fichier:

PDF, 141 KB

english, 2011

14

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences

Tarini Shankar Ghosh, Monzoorul Haque M, Sharmila S Mande

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 623 KB

english, 2010

15

Metagenome of the gut of a malnourished child

Sourav Sen Gupta, Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Suman Kanungo, Gopinath Balakrish Nair, Sharmila S Mande

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 3.03 MB

english, 2011

16

TWARIT: An extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences

Rachamalla Maheedhar Reddy, Monzoorul Haque Mohammed, Sharmila S Mande

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 794 KB

english, 2012

17

C16S — A Hidden Markov Model based algorithm for taxonomic classification of 16S rRNA gene sequences

Tarini Shankar Ghosh, Purnachander Gajjalla, Monzoorul Haque Mohammed, Sharmila S Mande

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 505 KB

english, 2012

18

Understanding the sequential activation of Type III and Type VI Secretion Systems inSalmonella typhimuriumusing Boolean modeling

Das, Chandrani, Dutta, Anirban, Rajasingh, Hannah, Mande, Sharmila S

Journal:

Année:

2013

Langue:

english

Fichier:

PDF, 657 KB

english, 2013

19

Igloo-Plot: A tool for visualization of multidimensional datasets

Kuntal, Bhusan K., Ghosh, Tarini Shankar, Mande, Sharmila S.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.13 MB

english, 2014

20

MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets

Reddy, Rachamalla Maheedhar, Mohammed, Monzoorul Haque, Mande, Sharmila S.

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 442 KB

english, 2014

21

Crystallographic Analyses of NADH Peroxidase Cys42Ala and Cys42Ser Mutants: Active Site Structures, Mechanistic Implications, and an Unusual Environment of Arg 303

Mande, Sharmila S., Parsonage, Derek, Claiborne, Al, Hol, Wim G. J.

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 3.13 MB

english, 1995

22

An L40C Mutation Converts the Cysteine-Sulfenic Acid Redox Center in Enterococcal NADH Peroxidase to a Disulfide

Miller, Holly, Mande, Sharmila S., Parsonage, Derek, Sarfaty, Steve H., Hol, Wim G. J., Claiborne, Al

Journal:

Année:

1995

Langue:

english

Fichier:

PDF, 1.99 MB

english, 1995

23

The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes

Vidyasagar, Mathukumalli, Mande, Sharmila S., Reddy, Ch. V. Siva Kumar, Rao, V. V. Raja

Journal:

IEEE Transactions on Automatic Control

Année:

2008

Langue:

english

Fichier:

PDF, 893 KB

english, 2008

24

Homology Model of a Novel Xylanase: Molecular Basis for High-Thermostability and Alkaline Stability

Mande, Sharmila S., Gupta, Naveen, Ghosh, Amit, Mande, Shekhar C.

Journal:

Journal of Biomolecular Structure and Dynamics

Année:

2000

Langue:

english

Fichier:

PDF, 277 KB

english, 2000

25

Conformational Variability in Modified Nucleosides. Crystal and Molecular Structure of 2′,3′-O-Isopropylidene Inosine

Mande, Sharmila S., Shamala, N., Seshadri, T. P., Viswamitra, M. A.

Journal:

Nucleosides and Nucleotides

Année:

1992

Langue:

english

Fichier:

PDF, 451 KB

english, 1992

26

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly

Ghosh, Tarini Shankar, Mehra, Varun, Mande, Sharmila S.

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 445 KB

english, 2015

27

CS-SCORE: Rapid identification and removal of human genome contaminants from metagenomic datasets

Haque, Mohammed Monzoorul, Bose, Tungadri, Dutta, Anirban, Reddy, Chennareddy Venkata Siva Kumar, Mande, Sharmila S.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 898 KB

english, 2015

28

FASTR: A novel data format for concomitant representation of RNA sequence and secondary structure information

Bose, Tungadri, Dutta, Anirban, MH, Mohammed, Gandhi, Hemang, Mande, Sharmila S

Journal:

Journal of Biosciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.37 MB

english, 2015

29

Influence of Acetyl and Bromine Substitutions on Stacking. Crystal and Molecular Structures of 8-Bromo 2′,3′,5′-Triacetyl Adenosine and 8-Bromo 2′,3′,5′-Triacetyl Guanosine

Mande, Sharmila S., Lalitha, H. N., Ramakumar, S., Viswamitra, M. A.

Journal:

Nucleosides and Nucleotides

Année:

1992

Langue:

english

Fichier:

PDF, 596 KB

english, 1992

30

In silicodissection of Type VII Secretion System components across bacteria: New directions towards functional characterization

Das, Chandrani, Ghosh, Tarini Shankar, Mande, Sharmila S

Journal:

Journal of Biosciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2016

31

CompNet: a GUI based tool for comparison of multiple biological interaction networks

Kuntal, Bhusan K., Dutta, Anirban, Mande, Sharmila S.

Journal:

BMC Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2016

32

Insights into horizontal acquisition patterns of dormancy and reactivation regulon genes in mycobacterial species using a partitioning-based framework

Mehra, Varun, Ghosh, Tarini Shankar, Mande, Sharmila S

Journal:

Journal of Biosciences

Année:

2016

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2016

33

Web-Igloo : A web based platform for multivariate data visualization

Kuntal, Bhusan K., Mande, Sharmila S.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 451 KB

english, 2016

34

Microbial community profiling shows dysbiosis in the lesional skin of Vitiligo subjects

Ganju, Parul, Nagpal, Sunil, Mohammed, MH, Nishal Kumar, P, Pandey, Rajesh, Natarajan, Vivek T, Mande, Sharmila S., Gokhale, Rajesh S.

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2016

35

Gut bacterial diversity of the tribes of India and comparison with the worldwide data

Dehingia, Madhusmita, Thangjam devi, Kanchal, Talukdar, Narayan C., Talukdar, Rupjyoti, Reddy, Nageshwar, Mande, Sharmila S., Deka, Manab, Khan, Mojibur R.

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2015

36

Gastric microbiome of Indian patients with Helicobacter pylori infection, and their interaction networks

Das, Anubhav, Pereira, Verima, Saxena, Shruti, Ghosh, Tarini Shankar, Anbumani, D., Bag, Satyabrata, Das, Bhabatosh, Nair, G. Balakrish, Abraham, Philip, Mande, Sharmila S.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 3.70 MB

english, 2017

37

First-trimester vaginal microbiome diversity: A potential indicator of preterm delivery risk

Haque, Mohammed Monzoorul, Merchant, Mitali, Kumar, Pinna Nishal, Dutta, Anirban, Mande, Sharmila S.

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 1.49 MB

english, 2017

38

A snapshot of gut microbiota of an adult urban population from Western region of India

Tandon, Disha, Haque, Mohammed Monzoorul, R., Saravanan, Shaikh, Shafiq, P., Sriram, Dubey, Ashok Kumar, Mande, Sharmila S., Arora, Pankaj Kumar

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 6.85 MB

english, 2018

39

Computational Analysis of the ESX-1 Region of Mycobacterium tuberculosis: Insights into the Mechanism of Type VII Secretion System

Das, Chandrani, Ghosh, Tarini Shankar, Mande, Sharmila S., Ahmed, Niyaz

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 747 KB

english, 2011

40

Binpairs: Utilization of Illumina Paired-End Information for Improving Efficiency of Taxonomic Binning of Metagenomic Sequences

Dutta, Anirban, Tandon, Disha, MH, Mohammed, Bose, Tungadri, Mande, Sharmila S., Melcher, Ulrich

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 631 KB

english, 2014

41

Global Profiling of Carbohydrate Active Enzymes in Human Gut Microbiome

Bhattacharya, Tanudeep, Ghosh, Tarini Shankar, Mande, Sharmila S., Aziz, Ramy K.

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 1006 KB

english, 2015

42

Vikodak - A Modular Framework for Inferring Functional Potential of Microbial Communities from 16S Metagenomic Datasets

Nagpal, Sunil, Haque, Mohammed Monzoorul, Mande, Sharmila S., Ahmed, Niyaz

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.09 MB

english, 2016

43

Alterations in the gut bacterial microbiome in fungal Keratitis patients

Kalyana Chakravarthy, Sama, Jayasudha, Rajagopalaboopathi, Ranjith, Konduri, Dutta, Anirban, Pinna, Nishal Kumar, Mande, Sharmila S., Sharma, Savitri, Garg, Prashant, Murthy, Somasheila I., Shivaji, S

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 15.02 MB

english, 2018

44

Computational Analysis of Host–Pathogen Protein Interactions between Humans and Different Strains of Enterohemorrhagic Escherichia coli

Bose, Tungadri, Venkatesh, K. V., Mande, Sharmila S.

Journal:

Frontiers in Cellular and Infection Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 1.29 MB

english, 2017

45

Dynamics and Control of Flagella Assembly in Salmonella typhimurium

Das, Chandrani, Mokashi, Chaitanya, Mande, Sharmila S., Saini, Supreet

Journal:

Frontiers in Cellular and Infection Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2018

46

Comparative In silico Analysis of Butyrate Production Pathways in Gut Commensals and Pathogens

Anand, Swadha, Kaur, Harrisham, Mande, Sharmila S.

Journal:

Frontiers in Microbiology

Année:

2016

Langue:

english

Fichier:

PDF, 2.51 MB

english, 2016

47

In Silico Analysis of Putrefaction Pathways in Bacteria and Its Implication in Colorectal Cancer

Kaur, Harrisham, Das, Chandrani, Mande, Sharmila S.

Journal:

Frontiers in Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 3.38 MB

english, 2017

48

‘TIME’: A Web Application for Obtaining Insights into Microbial Ecology Using Longitudinal Microbiome Data

Baksi, Krishanu D., Kuntal, Bhusan K., Mande, Sharmila S.

Journal:

Frontiers in Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 5.97 MB

english, 2018

49

Understanding the role of interactions between host and Mycobacterium tuberculosis under hypoxic condition: an in silico approach

Bose, Tungadri, Das, Chandrani, Dutta, Anirban, Mahamkali, Vishnuvardhan, Sadhu, Sudipta, Mande, Sharmila S.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 1.92 MB

english, 2018

50

‘NetShift’: a methodology for understanding ‘driver microbes’ from healthy and disease microbiome datasets

Kuntal, Bhusan K., Chandrakar, Pranjal, Sadhu, Sudipta, Mande, Sharmila S.

Journal:

The ISME Journal

Année:

2018

Langue:

english

Fichier:

PDF, 1.76 MB

english, 2018